Analyzing Eland files from Solexa sequencing

Split the alignment results into individual files for each scaffold:

• SeparateElandReads.pl -f Eland-file -o output-path

Count hits on each scaffold:

• AnalyzeElandFiles.pl -i input-path with Eland files (*.eland) > outputfile.txt

Portela J, Grunau C, Cosseau C, Beltran S, Dantec C, Parrinello H and Boissier, J. Whole-genome in-silico subtractive hybridization (WISH) - using massive sequencing for the identification of unique and repetitive sex-specific sequences: the example of Schistosoma mansoni. BMC Genomics - in press.

Go back